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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RXRA, retinoid X receptor, alpha
Sequence ID:NM_002957
Entrez Gene ID:6256
Ensembl ID:ENSG00000186350

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9q34.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 137218477 - 137328460

NM_002957 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1190137218315137218504
191441137293477137293727
442592137299994137300144
593772137300785137300964
773942137309003137309172
9431072137313521137313650
10731205137320953137321085
12061297137323750137323841
12981403137325947137326052
14045522137328312137332430

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5723745Full LengthBC110998retinoid X receptor, alpha
3956691IncompleteBC009882retinoid X receptor, alpha
4304205IncompleteBC007925retinoid X receptor, alpha
6528306IncompleteBC063827retinoid X receptor, alpha

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002948  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002957 NP_002948 P19793 Hormone_recep
zf-C4

Related Sequences

 
mRNAGenPeptSwissProt
U66306 AAC31116 O75798
BC063827 AAH63827 Q6P3U7
BC110998 AAI10999 P19793
EU446653 ABZ92182  
HQ692843 ADZ17354 F1D8Q5
AK090416 BAC03397 Q8NF63
AK131081 BAC85131 Q6ZNL3
AK131192 BAG54745 B3KY83
AB307705 BAH02296 P19793
X52773 CAA36982 P19793

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RXRA NP_002948 M.musculus Rxra 20181 Gene Info NP_035435 98
R.norvegicus Rxra 25271   NP_036937 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta