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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ZGPAT, zinc finger, CCCH-type with G patch domain
Sequence ID:NM_181484
NM_001083113
NM_001195653
NM_001195654
NM_032527
NM_181485
Entrez Gene ID:84619
Ensembl ID:ENSG00000197114

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:20q13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 62338816 - 62367493

 Exon Info From UCSC:
NM_001083113
NM_032527
NM_181485

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2906985Full LengthBC019338zinc finger, CCCH-type with G patch domain
5555076Full LengthBC032612zinc finger, CCCH-type with G patch domain

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_852150  NP_115916  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001083113 NP_001076582    
NM_001195653 NP_001182582    
NM_001195654 NP_001182583    
NM_032527 NP_115916 Q8N5A5 zf-CCCH
G-patch
NM_181485 NP_852150   zf-CCCH
G-patch

Related Sequences

 
mRNAGenPeptSwissProt
BC019338 AAH19338 Q8N5A5
BC032612 AAH32612 Q8N5A5
HQ448238 ADQ32718  
AB058750 BAB47476 Q8N5A5
AK027878 BAB55426 Q8N5A5
AK074961 BAC11317 Q8N5A5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ZGPAT NP_115916 M.musculus Zgpat 229007 Gene Info NP_001041613 81
R.norvegicus Zgpat 296478   NP_001009656 80
A.gambiae ZGPAT_ANOGA 1281359   XP_320928 34
D.melanogaster CG4709 34324   NP_609331 34
C.elegans C33H5.17 177568   NP_501296 28
A.thaliana AT2G24830 817020   NP_180056 27

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)