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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SBF1, SET binding factor 1
Sequence ID:NM_002972
Entrez Gene ID:6305
Ensembl ID:ENSG00000100241

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:22q13.33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 50900134 - 50906861

 Exon Info From UCSC:
NM_002972

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6671883Full LengthBC087612SET binding factor 1
3028662IncompleteBC009268SET binding factor 1
6142405IncompleteBC056915SET binding factor 1
6192910IncompleteBC046169SET binding factor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002963  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002972 NP_002963   PH
DENN
GRAM
dDENN
uDENN
Myotub-related

Related Sequences

 
mRNAGenPeptSwissProt
U93181 AAC39675 O95248
AF072929 AAC78842 O95248
BC009268 AAH09268 O95248
BC046169 AAH46169 Q86TK5
BC056915 AAH56915 Q6PGN5
BC087612 AAH87612 O95248
EU831514 ACE86433  
EU831421 ACE87108  
AB209682 BAD92919 Q59EX9
CR749672 CAH18463 Q68CX1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SBF1 NP_002963 M.musculus Sbf1 77980 Gene Info NP_001074499 95
R.norvegicus Sbf1 300147   XP_217021 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)