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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CHMP1A, charged multivesicular body protein 1A
Sequence ID:NM_001083314
NM_002768
NR_046418
Entrez Gene ID:5119
Ensembl ID:ENSG00000131165

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16q24.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 89712423 - 89724046

 Exon Info From UCSC:
NM_001083314
NM_002768

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40146733Full LengthBC132711chromatin modifying protein 1A
40146735Full LengthBC132713chromatin modifying protein 1A
3507056IncompleteBC007527procollagen (type III) N-endopeptidase

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001083314 NP_001076783    
NM_002768 NP_002759    

Related Sequences

 
mRNAGenPeptSwissProt
U58048 AAC50775 Q9HD42
AF281063 AAG01448 Q9HD42
BC010000 AAH10000 Q9HD42
BC132711 AAI32712 Q9HD42
BC132713 AAI32714 Q9HD42
BT006841 AAP35487 Q9HD42
HQ258103 ADR82857  
D38554 BAA07557 Q9HD42
AK302055 BAG63445 B4DXN3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CHMP1A NP_002759 M.musculus Chmp1a 234852 Gene Info NP_663581 97
R.norvegicus Chmp1a 365024   NP_001076782 97
S.cerevisiae DID2 853906   NP_012961 48
S.pombe did2 2539670   NP_596562 45

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)