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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HMGXB4, HMG box domain containing 4
Sequence ID:NM_001003681
Entrez Gene ID:10042
Ensembl ID:ENSG00000100281

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:22q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 35679954 - 35691799

 Exon Info From UCSC:
NM_001003681

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8143757Full LengthBC104754HMG box domain containing 4
8143759Full LengthBC104756HMG box domain containing 4
3528436IncompleteBC004194HMG box domain containing 4
3949218IncompleteBC025303HMG box domain containing 4
4299753IncompleteBC011723high-mobility group protein 2-like 1
4478964IncompleteBC033783high-mobility group protein 2-like 1
4549441IncompleteBC017326HMG box domain containing 4
5802064IncompleteBC080611high-mobility group protein 2-like 1
6202719IncompleteBC062413HMG box domain containing 4
6574134IncompleteBC052624HMG box domain containing 4
7475493IncompleteBC111373HMG box domain containing 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001003681  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001003681 NP_001003681 Q9UGU5 HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
BC004194 AAH04194 Q6PJC1
BC017326 AAH17326 Q6PJC1
BC025303 AAH25303 Q6PJ09
BC052624 AAH52624 Q7Z641
BC062413 AAH62413 Q6P681
BC104754 AAI04755 Q2M3X1
BC104756 AAI04757 Q2M3X1
BC111373 AAI11374 Q2T9L2
AK299833 BAG61700 B4DSN8
AJ010069 CAA08991 Q9UGU5
AJ010070 CAA08992 Q9UGU5
AL079310 CAB45240 Q9UGU5
CR456504 CAG30390 Q9UGU5
CU013102 CAK54533  
CU013390 CAK54832  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HMGXB4 NP_001003681 M.musculus Hmgxb4 70823 Gene Info NP_821136 88
R.norvegicus Hmgxb4 307667   NP_001100882 86
A.gambiae AgaP_AGAP006392 1277004   XP_316426 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)