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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. C16orf88, Chromosome 16 open reading frame 88
Sequence ID:NM_001012991
Entrez Gene ID:400506
Ensembl ID:ENSG00000103550

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16p12.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 19717673 - 19725578

NM_001012991 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
278941971767519718542
8959721972183019721907
97310411972269319722761
104219611972543919726358
196219741972947919729491

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
7971177Full LengthBC117562chromosome 16 open reading frame 88
3103049IncompleteBC089430chromosome 16 open reading frame 88

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001012991 NP_001013009 Q1ED39  

Related Sequences

 
mRNAGenPeptSwissProt
BC089430 AAH89430 Q1ED39
BC117562 AAI17563 Q1ED39

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens C16orf88 NP_001013009 M.musculus 2310008H09Rik 66356 Gene Info NP_075686 67
R.norvegicus RGD1565096 499255   NP_001128083 60

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)