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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CLN6, ceroid-lipofuscinosis, neuronal 6, late infantile, variant
Sequence ID:NM_017882
RefSeqGene ID:NG_008764
Entrez Gene ID:54982
Ensembl ID:ENSG00000128973

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
CEROID LIPOFUSCINOSIS, NEURONAL, 6 
CEROIDLIPOFUSCINOSIS, NEURONAL, KUFS TYPE, ADULT ONSET 

Cytogenetic Location (from UniGene)

Cytogenetic Location:15q23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 68499329 - 68522025

NM_017882 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1814356849933068500747
143615586850197468502096
155916146850360068503655
161518036850401268504200
180419026850662768506725
190320176851087368510987
201822586852183968522079

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3878776Full LengthBC010849ceroid-lipofuscinosis, neuronal 6, late infantile, variant
4517748Full LengthBC013130ceroid-lipofuscinosis, neuronal 6, late infantile, variant

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_017882 NP_060352 Q9NWW5  

Related Sequences

 
mRNAGenPeptSwissProt
BC010849 AAH10849 Q9NWW5
BC013130 AAH13130 Q9NWW5
DQ891480 ABM82406  
EU176598 ABW03399  
AK000568 BAA91260 Q9NWW5
AK027604 BAB55226 Q9NWW5
AK074753 BAC11181 Q8NCG1
AK291175 BAF83864 Q9NWW5
AK293155 BAG56700 B4DDD9
AK293197 BAG56737 B4DDH6
CR457244 CAG33525 Q9NWW5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLN6 NP_060352 M.musculus Cln6 76524 Gene Info NP_001028347 91
R.norvegicus Cln6 315746   XP_236325 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)