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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CTNNAL1, catenin (cadherin-associated protein), alpha-like 1
Sequence ID:NM_003798
Entrez Gene ID:8727
Ensembl ID:ENSG00000119326

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9q31.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 111705050 - 111775722

 Exon Info From UCSC:
NM_003798

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40125759Full LengthBC117208catenin (cadherin-associated protein), alpha-like 1
40125785Full LengthBC117234catenin (cadherin-associated protein), alpha-like 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003789  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003798 NP_003789 Q9UBT7 Vinculin

Related Sequences

 
mRNAGenPeptSwissProt
AF006070 AAC26011 Q9UBT7
U97067 AAC27693 Q9UBT7
AF080071 AAC69576 Q9UBT7
AF030233 AAC83460 Q9UBT7
AF135021 AAF07819 Q9UBT7
BC117208 AAI17209 Q9UBT7
BC117234 AAI17235 Q9UBT7
HQ258655 ADR83406  
AK223230 BAD96950 Q9UBT7
AK314677 BAG37231 B2RBI4
AK022926 BAG51138 B3KMX6
AB451283 BAG70097 Q9UBT7
AB451415 BAG70229 Q9UBT7
AL050016 CAB43238 Q9UBT7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CTNNAL1 NP_003789 M.musculus Ctnnal1 54366 Gene Info NP_061231 88
R.norvegicus Ctnnal1 298019   NP_001100119 87
A.gambiae AgaP_AGAP011097 1270830   XP_309552 42
C.elegans ctn-1 171818   NP_491008 42
D.melanogaster alpha-catenin-related 49713   NP_652073 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)