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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TDG, thymine-DNA glycosylase
Sequence ID:NM_003211
NM_001008411
Entrez Gene ID:6996
Ensembl ID:ENSG00000139372

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q24.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 104373732 - 104381022

Transcript StartTranscript EndChromosomal Start Chromosomal End
1246104359592104359837
247389104370695104370837
390631104373608104373849
632701104374670104374739
702837104376576104376711
838920104376913104376995
9211015104377072104377166
10161187104378526104378697
11881313104379380104379505
13143243104380725104382654

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5184772Full LengthBC037557thymine-DNA glycosylase
3881825IncompleteBC019925thymine-DNA glycosylase
6605225IncompleteBC104477thymine-DNA glycosylase

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003202  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_003211 NP_003202 Q13569 EC 3.2.2.29 UDG

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC019925 AAH19925 Q05CX8  
BC037557 AAH37557 Q13569 EC 3.2.2.29
BC104477 AAI04478 Q3SX60  
AK313234 BAG36045 B2R848  
AK295387 BAG58341 B4DI29  
AK299832 BAG61699 B4DSN7  
AK303631 BAG64639 B4E127  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TDG NP_003202 R.norvegicus Tdg 114521   NP_446181 90
M.musculus Gm9855 624784 Gene Info XP_897005 90
M.musculus Tdg 21665 Gene Info NP_766140 89
M.musculus Gm5806 545124 Gene Info XP_906829 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)