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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. NUP88, nucleoporin 88kDa
Sequence ID:NM_002532
Entrez Gene ID:4927
Ensembl ID:ENSG00000108559

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17p13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 5290967 - 5322982

 Exon Info From UCSC:
NM_002532

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2822595Full LengthBC000335nucleoporin 88kDa

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002532 NP_002523 Q99567  

Related Sequences

 
mRNAGenPeptSwissProt
BC000335 AAH00335 Q99567
AK298158 BAG60432 B4DP20
AK299000 BAH12922 B7Z5I6
Y08612 CAA69904 Q99567

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens NUP88 NP_002523 R.norvegicus Nup88 113929   NP_446068 90
M.musculus Nup88 19069 Gene Info NP_765982 90
A.gambiae AgaP_AGAP001179 5667646   XP_001689384 33
D.melanogaster mbo 41562   NP_524330 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)