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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. GPC4, glypican 4
Sequence ID:NM_001448
RefSeqGene ID:NG_012498
Entrez Gene ID:2239
Ensembl ID:ENSG00000076716

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:Xq26.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 132435063 - 132549205

NM_001448 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12034132435063132437096
20352210132437193132437368
22112347132438752132438888
23482494132439799132439945
24952625132440051132440181
26262791132445285132445450
27923183132458172132458563
31843342132473210132473368
33433714132548833132549204

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3922774Full LengthBC017166glypican 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001439  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001448 NP_001439 O75487 Glypican

Related Sequences

 
mRNAGenPeptSwissProt
AF064826 AAC31899 O75487
AF030186 AAC69991 O75487
BC017166 AAH17166 O75487
AY052833 AAL11018 O75487
AY358507 AAQ88871 O75487
DQ891809 ABM82735  
DQ894992 ABM85918  
AK312605 BAG35494 O75487
AK304207 BAG65082 B4E2C0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GPC4 NP_001439 M.musculus Gpc4 14735 Gene Info NP_032176 95
R.norvegicus Gpc4 317322   NP_001014130 94
D.melanogaster dlp 39596   NP_524071 41
A.gambiae AgaP_AGAP003559 1274218   XP_313306 40
C.elegans gpn-1 181658   NP_510582 27

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)