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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PGLYRP4, Peptidoglycan recognition protein 4
Sequence ID:NM_020393
Entrez Gene ID:57115
Ensembl ID:ENSG00000163218

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 153302596 - 153303046

NM_020393 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
22845153302597153303420
846964153309656153309774
9651163153312856153313054
11641316153314102153314254
13171435153315565153315683
14361649153317644153317857
16501739153318577153318666
17401834153320359153320453
18351853153321003153321021

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40032748Full LengthBC107157peptidoglycan recognition protein 4
40032750Full LengthBC107158peptidoglycan recognition protein 4
40147772Full LengthBC142636peptidoglycan recognition protein 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_065126  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_020393 NP_065126 Q96LB8 Amidase_2

Related Sequences

 
mRNAGenPeptSwissProt
AF242518 AAF99599 Q96LB8
BC107157 AAI07158 Q96LB8
BC107158 AAI07159 Q96LB8
BC142636 AAI42637 Q96LB8
AY035377 AAK72485 Q96LB8
AK292203 BAF84892 Q96LB8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PGLYRP4 NP_065126 M.musculus Pglyrp4 384997 Gene Info NP_001159440 76
R.norvegicus Pglyrp4 310611   XP_227383 73
D.melanogaster PGRP-LF 39064   NP_648299 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)