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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SAMHD1, SAM domain and HD domain 1
Sequence ID:NM_015474
RefSeqGene ID:NG_017059
Entrez Gene ID:25939
Ensembl ID:ENSG00000101347

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:20pter-q12

Chromosomal Position (from UCSC)

Chromosomal Position:20: 35521334 - 35580046

 Exon Info From UCSC:
NM_015474

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4816438Full LengthBC036450SAM domain and HD domain 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_056289  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015474 NP_056289 Q9Y3Z3 HD
SAM_2

Related Sequences

 
mRNAGenPeptSwissProt
AF228421 AAF32407 Q9Y3Z3
BC036450 AAH36450 Q9Y3Z3
JF432320 ADZ15537  
AB013847 BAB18916 Q9Y3Z3
AK027811 BAB55386 Q9Y3Z3
AB208944 BAD92181 Q59H15
AK304187 BAG65067 Q9Y3Z3
AK304795 BAG65545 A6NDZ3
AL050267 CAB43368 Q9Y3Z3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SAMHD1 NP_056289 M.musculus Samhd1 56045 Gene Info NP_061339 75
R.norvegicus Samhd1 311580   XP_230789 74
A.thaliana AT5G40290 834027   NP_198845 41
A.thaliana AT5G40270 834025   NP_568580 41
C.elegans ZK177.8 173937   NP_495054 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)