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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CCL21, chemokine (C-C motif) ligand 21
Sequence ID:NM_002989
Entrez Gene ID:6366
Ensembl ID:ENSG00000137077

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 34709003 - 34710121

NM_002989 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
34233470900334709423
4246063470949634709678
6077273470977334709893
7288783470999634710146

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5226781Full LengthBC027918chemokine (C-C motif) ligand 21

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002980  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002989 NP_002980 O00585
Q6ICR7
IL8

Related Sequences

 
mRNAGenPeptSwissProt
AF001979 AAB86594 O00585
Q6ICR7
U88320 AAB91454 O00585
Q6ICR7
BC027918 AAH27918 O00585
Q6ICR7
AY358887 AAQ89246 O00585
Q6ICR7
DQ892048 ABM82974  
DQ895242 ABM86168  
AB002409 BAA21817 O00585
Q6ICR7
AK311901 BAG34842 Q6ICR7
CR450326 CAG29322 O00585
Q6ICR7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CCL21 NP_002980 M.musculus Ccl21b 100042493   NP_035465 71
M.musculus LOC100041593 100041593   XP_001473444 71
M.musculus Ccl21a 18829 Gene Info NP_035254 71
M.musculus Gm1987 100504362 Gene Info XP_003085475 71
M.musculus Gm10591 100504239   XP_003085470 71
M.musculus Gm13304 100504346   XP_003085593 71
M.musculus LOC100041504 100041504   XP_001473308 71
M.musculus Ccl21c 65956   NP_075539 71
R.norvegicus Ccl21 298006   NP_001008513 69

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)