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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. USP47, ubiquitin specific peptidase 47
Sequence ID:NM_017944
Entrez Gene ID:55031
Ensembl ID:ENSG00000170242

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11p15.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 11978121 - 11979466

 Exon Info From UCSC:
NM_017944

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4499200IncompleteBC030562ubiquitin specific peptidase 47
4672711IncompleteBC017795ubiquitin specific peptidase 47
5575723IncompleteBC047044ubiquitin specific peptidase 47
100015552BC148587ubiquitin specific peptidase 47

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060414  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_017944 NP_060414   UCH

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF059318 AAG43115 Q9H3L7  
BC000226 AAH00226 Q96K76 EC 3.4.19.12
BC017795 AAH17795 A0PJ80  
BC047044 AAH47044 Q96K76 EC 3.4.19.12
BC148587 AAI48588    
AK000734 BAA91348 Q96K76 EC 3.4.19.12
AK027362 BAB55063 Q96K76 EC 3.4.19.12
AK074076 BAB84902 Q96K76 EC 3.4.19.12
AK092290 BAG52521 B3KRV9  
AK127264 BAG54467 Q96K76 EC 3.4.19.12
AL832991 CAH56337 Q96K76 EC 3.4.19.12

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens USP47 NP_060414 R.norvegicus Usp47 308896   NP_001101012 96
M.musculus Usp47 74996 Gene Info NP_598519 95
D.melanogaster Ubp64E 38644   NP_996001 44
A.gambiae AgaP_AGAP007106 4576308   XP_001237119 43
C.elegans T05H10.1 174290   NP_495686 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)