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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. NUP62, nucleoporin 62kDa
Sequence ID:NM_001193357
NM_012346
NM_016553
NM_153718
NM_153719
RefSeqGene ID:NG_023448
Entrez Gene ID:23636
Ensembl ID:ENSG00000213024

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, parathyroid, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
STRIATONIGRAL DEGENERATION, INFANTILE 

Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 50410083 - 50431503

 Exon Info From UCSC:
NM_001193357
NM_012346
NM_016553
NM_153718
NM_153719

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3050260Full LengthBC003663nucleoporin 62kDa
4499630Full LengthBC014842nucleoporin 62kDa
6021336Full LengthBC050717nucleoporin 62kDa
30335030Full LengthBC095410nucleoporin 62kDa
40011533Full LengthBC101104nucleoporin 62kDa
40011537Full LengthBC101105nucleoporin 62kDa
40011539Full LengthBC101106nucleoporin 62kDa
40011540Full LengthBC101107nucleoporin 62kDa

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_714940  NP_057637  NP_036478  NP_714941  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001193357 NP_001180286      
NM_001258017 NP_001244946      
NM_001258018 NP_001244947      
NM_012346 NP_036478 P37198   Nsp1_C
NM_016553 NP_057637     Nsp1_C
NM_152899 NP_690863 Q96RQ9 EC 1.4.3.2 Amino_oxidase
NM_153718 NP_714940     Nsp1_C
NM_153719 NP_714941     Nsp1_C
NM_172374 NP_758962      

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC003663 AAH03663 P37198  
BC014842 AAH14842 P37198  
BC050717 AAH50717 P37198  
BC064378 AAH64378 Q96RQ9 EC 1.4.3.2
BC090852 AAH90852 Q96RQ9 EC 1.4.3.2
BC095410 AAH95410 P37198  
BC101104 AAI01105 P37198  
BC101105 AAI01106 P37198  
BC101106 AAI01107 P37198  
BC101107 AAI01108 P37198  
BC131625 AAI31626 A2RRH1  
AF293462 AAK73362 Q96RQ9 EC 1.4.3.2
AF318357 AAL55864 Q8WYU3  
AY358933 AAQ89292 Q96RQ9 EC 1.4.3.2
DQ079587 AAZ32711 Q96RQ9 EC 1.4.3.2
DQ079588 AAZ32712 Q96RQ9 EC 1.4.3.2
DQ079589 AAZ32713 Q96RQ9 EC 1.4.3.2
DQ892591 ABM83517    
DQ896857 ABM87856    
AK125857 BAG54257 P37198  
X58521 CAA41411 P37198  
AL162061 CAB82399 P37198  
CR541721 CAG46522 P37198  
AJ880386 CAI54291 Q96RQ9 EC 1.4.3.2
AJ880387 CAI54292 Q96RQ9 EC 1.4.3.2
AJ880388 CAI54293 Q96RQ9 EC 1.4.3.2
AM393785 CAL38660    

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens NUP62 NP_001180286 M.musculus Nup62 18226 Gene Info NP_444304 81
R.norvegicus Nup62 65274   NP_075586 81
A.gambiae AgaP_AGAP010978 1270979   XP_309717 46
D.melanogaster Nup62 36830   NP_611120 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta