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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TNRC6C, Trinucleotide repeat containing 6C
Sequence ID:NM_001142640
NM_018996
Entrez Gene ID:57690
Ensembl ID:ENSG00000078687

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17q25.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 76044993 - 76101021

 Exon Info From UCSC:
NM_001142640
NM_018996

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100063413Full LengthBC157115trinucleotide repeat containing 6C
5274775IncompleteBC045631trinucleotide repeat containing 6C
100061853BC156366trinucleotide repeat containing 6C

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001142640 NP_001136112    
NM_018996 NP_061869 Q9HCJ0  

Related Sequences

 
mRNAGenPeptSwissProt
BC045631 AAH45631 Q9HCJ0
BC156366 AAI56367  
BC157115 AAI57116  
AK000022 BAA90890 Q9NXW7
AB046802 BAB13408 Q9HCJ0
AK056421 BAB71179 Q9HCJ0
AL834429 CAD39090 Q9HCJ0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TNRC6C NP_001136112 M.musculus Tnrc6c 217351 Gene Info NP_932139 91
A.gambiae AgaP_AGAP007808 5668256   XP_001689052 33
A.gambiae AgaP_AGAP007802 1278159   XP_317704 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)