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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CANX, calnexin
Sequence ID:NM_001024649
NM_001746
Entrez Gene ID:821
Ensembl ID:ENSG00000127022

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q35Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 179156274 - 179157654

 Exon Info From UCSC:
NM_001024649
NM_001746

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3546389Full LengthBC003552calnexin
4342723Full LengthBC042843calnexin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001019820  NP_001737  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001024649 NP_001019820 P27824 Calreticulin
NM_001746 NP_001737 P27824 Calreticulin

Related Sequences

 
mRNAGenPeptSwissProt
L18887 AAA21013 P27824
M94859 AAA21749 P27824
M98452 AAA35696 P27824
L10284 AAA36125 P27824
BC003552 AAH03552 P27824
BC042843 AAH42843 P27824
DQ893794 ABM84720  
DQ890627 ABM92244  
AK129990 BAC85269 Q6ZP56
AK312334 BAG35255 P27824
AK294702 BAG57859 B4DGP8
AK304420 BAG65250 B4E2T8
AJ271880 CAB72137 P27824

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CANX NP_001019820 R.norvegicus Canx 29144   NP_742005 94
M.musculus Canx 12330 Gene Info NP_001103969 93
S.pombe cnx1 2543041   NP_593612 53
N.crassa NCU09265 3880849   XP_964700 53
A.thaliana CNX1 836301   NP_200987 52
A.thaliana AT5G07340 830625   NP_001190249 48
C.elegans cnx-1 176390   NP_499176 45
S.cerevisiae CNE1 851241   NP_009343 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta