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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. C9orf41, Chromosome 9 open reading frame 41
Sequence ID:NM_152420
Entrez Gene ID:138199
Ensembl ID:ENSG00000156017

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9q21.13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 77598451 - 77632210

NM_152420 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
299387759787477598783
93910427759982277599925
104311567761136277611475
115713357761351377613691
133614767761464577614785
147716407763118377631346
164118367763216877632363
183722197764292777643309

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4278547Full LengthBC034033chromosome 9 open reading frame 41

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_689633  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_152420 NP_689633 Q8N4J0 N2227

Related Sequences

 
mRNAGenPeptSwissProt
BC034033 AAH34033 Q8N4J0
EU832602 ACE87004  
EU832520 ACE87692  
HQ447650 ADQ32135  
AK098661 BAC05369 Q8N4J0
AK299691 BAG61596 B4DSD4
BX538061 CAD97992 Q8N4J0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens C9orf41 NP_689633 M.musculus 2410127L17Rik 67383 Gene Info NP_080396 92
R.norvegicus RGD1311863 293871   NP_001020145 92
A.thaliana AT2G32170 817776   NP_850185 50
D.melanogaster CG11596 31158   NP_726779 46
A.gambiae AgaP_AGAP007115 1269989   XP_308644 45
P.falciparum PFC0390w 814409   XP_001351167 44
A.thaliana AT2G32160 817775   NP_180775 43
C.elegans Y48E1C.2 174983   NP_496829 43
S.pombe SPBC1778.07 2540132   NP_596290 42
N.crassa NCU03692 3877632   XP_961468 40
S.cerevisiae YNL092W 855632   NP_014307 37