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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CLDN20, claudin 20
Sequence ID:NM_001001346
RefSeqGene ID:NG_027528
Entrez Gene ID:49861
Ensembl ID:ENSG00000171217

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6q25Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 155585146 - 155597679

NM_001001346 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1276155585146155585421
2771208155596749155597680

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4243903Full LengthBC020838claudin 20

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001001346  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001001346 NP_001001346 P56880 PMP22_Claudin

Related Sequences

 
mRNAGenPeptSwissProt
BC020838 AAH20838 P56880
HQ447712 ADQ32197  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLDN20 NP_001001346 R.norvegicus Cldn20 680178   NP_001102864 77
M.musculus Cldn20 621628 Gene Info NP_001095030 74

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)