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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. DSC1, desmocollin 1
Sequence ID:NM_004948
NM_024421
RefSeqGene ID:NG_029192
Entrez Gene ID:1823
Ensembl ID:ENSG00000134765

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:18q12.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:18: 28709198 - 28742819

 Exon Info From UCSC:
NM_004948
NM_024421

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100015280BC148349desmocollin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_077739  NP_004939  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004948 NP_004939 Q9HB00 Cadherin
NM_024421 NP_077739 Q08554 Cadherin

Related Sequences

 
mRNAGenPeptSwissProt
BC148349 AAI48350  
X72925 CAA51428 Q9HB00
Q08554
X72925 CAA51429 Q08554
Z34522 CAA84278 Q08554
Z34522 CAA84279 Q08554

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens DSC1 NP_077739 M.musculus Dsc1 13505 Gene Info NP_038532 82

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)