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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SNRPN, small nuclear ribonucleoprotein polypeptide N
Sequence ID:NM_003097
RefSeqGene ID:NG_002690
Entrez Gene ID:6638
Ensembl ID:ENSG00000128739

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes

Cytogenetic Location (from UniGene)

Cytogenetic Location:15q11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 25200135 - 25219603

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2958068Full LengthBC003180small nuclear ribonucleoprotein polypeptide N
3347412Full LengthBC000611small nuclear ribonucleoprotein polypeptide N
3907606Full LengthBC024777small nuclear ribonucleoprotein polypeptide N
4158469Full LengthBC025178small nuclear ribonucleoprotein polypeptide N

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_073717  NP_003088  NP_073719  NP_073716  NP_005669  NP_073718  NP_073715  

Protein Infomation

NM_003097 NP_003088 P63162 LSM
NM_005678 NP_005669 Q9Y675 SNURF
NM_022804 NP_073715 Q9Y675 SNURF
NM_022805 NP_073716 P63162 LSM
NM_022806 NP_073717 P63162 LSM
NM_022807 NP_073718 P63162 LSM
NM_022808 NP_073719 P63162 LSM

Related Sequences

J04615 AAA36617 P63162
U41303 AAA98969 P63162
AF101044 AAD31391 Q9Y675
BC000611 AAH00611 P63162
BC003180 AAH03180 P63162
BC024777 AAH24777 P63162
BC025178 AAH25178 P63162
AF319523 AAK18178 Q9BPU5
AF400432 AAK92481 P63162
DQ892886 ABM83812  
DQ896135 ABM87134  
HQ447144 ADQ31631  
AB061718 BAB69068 Q96Q13
AK222633 BAD96353 Q53HE7
AK123119 BAG53873 B3KVR1
X15892 CAA33901 P63162
X16163 CAA34288 Q6LBS1
CR450350 CAG29346 P63162
BX648788 CAI46029 Q5HYA3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens SNRPN NP_003088 M.musculus Snrpn 20646 Gene Info NP_001076430 100
R.norvegicus Snrpn 81781   NP_112379 100

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)