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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. IFNA16, interferon, alpha 16
Sequence ID:NM_002173
Entrez Gene ID:3449
Ensembl ID:ENSG00000147885

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9p22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 21216371 - 21217310

NM_002173 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
19392121637121217309

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100015033Full LengthBC146500interferon, alpha 16
100014290BC140290interferon, alpha 16

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002164  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002173 NP_002164 P05015 Interferon

Related Sequences

 
mRNAGenPeptSwissProt
M28585 AAA36042 P05015
BC140290 AAI40291  
BC146500 AAI46501  
X00140 CAA24970 Q14618

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens IFNA16 NP_002164 R.norvegicus Ifna11 298211   XP_233150 60
R.norvegicus Ifna4 298205   NP_001100137 60
R.norvegicus LOC690891 690891   XP_001076043 60
R.norvegicus Ifna2 298213   XP_233152 60
M.musculus Ifna4 15967 Gene Info NP_034634 59
R.norvegicus RGD1565225 500491   XP_575856 59
R.norvegicus RGD1564517 502964   XP_578469 58
R.norvegicus Ifna1 298210   NP_001014786 58
R.norvegicus RGD1564897 502962   XP_578467 57
R.norvegicus RGD1559679 502961   XP_578466 56

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)