Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HSPG2, heparan sulfate proteoglycan 2
Sequence ID:NM_005529
RefSeqGene ID:NG_016740
Entrez Gene ID:3339
Ensembl ID:ENSG00000142798

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
DYSSEGMENTAL DYSPLASIA,SILVERMAN-HANDMAKER TYPE 
SCHWARTZ-JAMPEL SYNDROME, TYPE 1 

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p36.1-p34Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 22148738 - 22181211

 Exon Info From UCSC:
NM_005529

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40005996IncompleteBC109204heparan sulfate proteoglycan 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005520  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005529 NP_005520 P98160 EGF
ig
Laminin_B
Laminin_EGF
Ldl_recept_a
SEA
Laminin_G_2
I-set
V-set

Related Sequences

 
mRNAGenPeptSwissProt
M64283 AAA52699 P98160
M85289 AAA52700 P98160
S76436 AAB21121 P98160
BC109204 AAI09205 Q2VPA1
AF479675 AAL79552 Q8TEU3
AB209851 BAD93088 Q59EG0
X62515 CAA44373 P98160

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HSPG2 NP_005520 M.musculus Hspg2 15530 Gene Info NP_032331 86
C.elegans unc-52 175126   NP_497044 30

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)