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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. APOBEC1, Apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
Sequence ID:NM_001644
Entrez Gene ID:339
Ensembl ID:ENSG00000111701

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12p13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 7802184 - 7818489

NM_001644 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
2131678019967802291
31743578036187803736
43683378050337805430
83486178072007807227
86291178184527818501

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100068999Full LengthBC172305apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
40003120IncompleteBC096158apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
40003122IncompleteBC096160apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
40003123IncompleteBC096161apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
40003124IncompleteBC101405apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
40003125IncompleteBC101973apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
40003127IncompleteBC101404apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
40003128IncompleteBC101972apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001635  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001644 NP_001635 P41238 APOBEC_C
APOBEC_N

Related Sequences

 
mRNAGenPeptSwissProt
L26234 AAA64230 P41238
L25877 AAA86766 P41238
U72891 AAD00185 P41238
U72890 AAD09567  
U78720 AAD10701 P41238
BC096158 AAH96158 Q4VB33
BC101972 AAI01973 Q4VB33
BC101973 AAI01974 Q4VB33
BC172305 AAI72305  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens APOBEC1 NP_001635 M.musculus Apobec1 11810 Gene Info NP_112436 71
R.norvegicus Apobec1 25383   NP_037039 70

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)