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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SMARCA5, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
Sequence ID:NM_003601
Entrez Gene ID:8467
Ensembl ID:ENSG00000153147

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4q31.1-q31.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 144434875 - 144474567

 Exon Info From UCSC:
NM_003601

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4340921Full LengthBC023144SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003601 NP_003592 O60264  

Related Sequences

 
mRNAGenPeptSwissProt
BC023144 AAH23144 O60264
JF432501 ADZ15718  
AB010882 BAA25173 O60264
AK302841 BAG64032 B4DZC0
AK316444 BAH14815 B7ZAX9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SMARCA5 NP_003592 R.norvegicus Smarca5 307766   NP_001100889 99
M.musculus Smarca5 93762 Gene Info NP_444354 98
A.thaliana CHR17 831980   NP_568365 58
A.thaliana CHR11 819814   NP_001189827 57
N.crassa NCU03875 3872686   XP_956548 55
S.cerevisiae ISW1 852547   NP_009804 53

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)