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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SCD, stearoyl-CoA desaturase (delta-9-desaturase)
Sequence ID:NM_005063
Entrez Gene ID:6319
Ensembl ID:ENSG00000099194

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10q24.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 102106880 - 102124591

NM_005063 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1517102106771102107287
518800102107820102108102
801931102112122102112252
9321137102114183102114388
11381370102116288102116520
13715467102120490102124586

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6586153Full LengthBC062303stearoyl-CoA desaturase (delta-9-desaturase)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005054  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_005063 NP_005054 O00767 EC 1.14.19.1 FA_desaturase

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
S70284 AAB30631 O00767 EC 1.14.19.1
AF097514 AAD29870 O00767 EC 1.14.19.1
BC005807 AAH05807 O00767 EC 1.14.19.1
BC062303 AAH62303 O00767 EC 1.14.19.1
AF109362 AAQ13510    
AB032261 BAA93510 O00767 EC 1.14.19.1
AB208982 BAD92219 Q59GX7  
AK222862 BAD96582 O00767 EC 1.14.19.1
AK312312 BAG35237 O00767 EC 1.14.19.1
Y13647 CAA73998 O00767 EC 1.14.19.1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SCD NP_005054 M.musculus Scd1 20249 Gene Info NP_033153 85
R.norvegicus Scd1 246074   NP_631931 85
A.gambiae AgaP_AGAP003418 1272792   XP_311704 58
D.melanogaster CG8630 41629   NP_731781 51

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)