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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RPL39, ribosomal protein L39
Sequence ID:NM_001000
RefSeqGene ID:NG_016250
Entrez Gene ID:6170
Ensembl ID:ENSG00000198918

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:Xq24Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 118920467 - 118925592

NM_001000 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1227118920468118920694
228331118923870118923973
332401118925536118925605

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3343512Full LengthBC001019ribosomal protein L39
6732169Full LengthBC070205ribosomal protein L39

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000991  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001000 NP_000991 P62891 Ribosomal_L39

Related Sequences

 
mRNAGenPeptSwissProt
U57846 AAB02265 P62891
BC001019 AAH01019 P62891
BC070205 AAH70205 P62891
DQ891888 ABM82814  
DQ895074 ABM86000  
D28397 BAA05763  
D79205 BAA11465 P62891

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPL39 NP_000991 M.musculus Gm15430 100503815   XP_003085119 100
M.musculus Rpl39 67248 Gene Info NP_080331 100
R.norvegicus LOC100361661 100361661   XP_002730272 100
R.norvegicus Rpl39 25347   NP_037007 100

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)