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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. KDM3A, lysine (K)-specific demethylase 3A
Sequence ID:NM_001146688
NM_018433
Entrez Gene ID:55818
Ensembl ID:ENSG00000115548

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2p11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 86668507 - 86719838

 Exon Info From UCSC:
NM_001146688
NM_018433

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100069241Full LengthBC172547jumonji domain containing 1A
4823253IncompleteBC038297jumonji domain containing 1A
100063135BC156518jumonji domain containing 1A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060903  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001146688 NP_001140160    
NM_018433 NP_060903 Q9Y4C1 JmjC

Related Sequences

 
mRNAGenPeptSwissProt
BC156518 AAI56519  
BC172547 AAI72547  
AB018285 BAA34462 Q9Y4C1
AK304276 BAG65137 B4E2H5
BX640698 CAE45820 Q9Y4C1
CR749581 CAH18373 Q9Y4C1
AL832150 CAH18459 Q9Y4C1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens KDM3A NP_001140160 M.musculus Kdm3a 104263 Gene Info NP_001033784 92
R.norvegicus Kdm3a 312440   NP_786940 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)