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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PBX1, pre-B-cell leukemia homeobox 1
Sequence ID:NM_001204961
NM_001204963
NM_002585
RefSeqGene ID:NG_028246
Entrez Gene ID:5087
Ensembl ID:ENSG00000185630

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, stem cell, stomach, synovium, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 164818164 - 164819579

Transcript StartTranscript EndChromosomal Start Chromosomal End
1449164528801164529249
450523164532474164532547
524768164761730164761974
769959164768935164769125
9601095164776778164776913
10961255164781226164781385
12561368164789308164789420
13691458164790773164790862
14596683164815820164821044

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8069084Full LengthBC101578pre-B-cell leukemia homeobox 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002576  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001204961 NP_001191890    
NM_001204963 NP_001191892    
NM_002585 NP_002576 P40424 Homeobox
PBC

Related Sequences

 
mRNAGenPeptSwissProt
M31170 AAA36484  
M86546 AAA60031 P40424
BC101578 AAI01579 P40424
BT006705 AAP35351 Q53YC7
AK291415 BAF84104 A8K5V0
AK299673 BAG61583 P40424
AK301540 BAH13510 B7Z774
CR749446 CAH18284 Q68DD6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PBX1 NP_002576 M.musculus Pbx1 18514 Gene Info NP_899198 100
R.norvegicus Pbx1 304947   NP_001128334 100
D.melanogaster exd 32567   NP_727924 76
A.gambiae EXD_ANOGA 1278540   XP_318146 75
C.elegans ceh-20 3565545   NP_001022555 64

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)