Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TNFSF13, tumor necrosis factor (ligand) superfamily, member 13
Sequence ID:NM_001198622
NM_001198623
NM_001198624
NM_003808
NM_172087
NM_172088
NR_073490
RefSeqGene ID:NG_029949
Entrez Gene ID:8741
Ensembl ID:ENSG00000161955

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17p13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 7452453 - 7461205

 Exon Info From UCSC:
NM_003808
NM_172087
NM_172088

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3837834Full LengthBC008042tumor necrosis factor (ligand) superfamily, member 13

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003799  NP_742085  NP_742086  NP_003800  NP_742084  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001198622 NP_001185551    
NM_001198623 NP_001185552    
NM_001198624 NP_001185553    
NM_003808 NP_003799 O75888 TNF
NM_003809 NP_003800 O43508
Q4ACW9
TNF
NM_172087 NP_742084   TNF
NM_172088 NP_742085   TNF
NM_172089 NP_742086 Q8IZK7 TNF

Related Sequences

 
mRNAGenPeptSwissProt
AF055872 AAC39724 O43508
Q4ACW9
AF030099 AAC51923 O43508
Q4ACW9
AF046888 AAC61312 O75888
AF136294 AAD29422 O75888
AF184972 AAF01321 O75888
AF114011 AAF59828 O75888
AF114012 AAF59829 O75888
AF114013 AAF59830 O75888
BC008042 AAH08042 O75888
BC019047 AAH19047 O43508
BC071837 AAH71837 C0H5Y4
BC104420 AAI04421 O43508
Q4ACW9
BC156811 AAI56812  
AY081050 AAL90442 O75888
AY081051 AAL90443 Q8IZK7
AY358870 AAQ89229 O43508
Q4ACW9
AY358880 AAQ89239 O75888
AY377858 AAQ91388 Q6U6I7
BT019561 AAV38368 O75888
BT019562 AAV38369 O75888
DQ149579 ABA39072 Q2QBA2
EF211088 ABQ88322 A5Y848
EU832077 ACE86739  
EU831984 ACE87425  
JF432764 ADZ15981  
AK090698 BAG52214 B3KR02
AK301221 BAG62794 O75888
CR542040 CAG46837 Q6FGR7
CR542073 CAG46870 Q6FGN4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TNFSF13 NP_003799 M.musculus Tnfsf13 69583   NP_076006 81
R.norvegicus Tnfsf13 287437   NP_001009623 80

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta