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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. VTCN1, V-set domain containing T cell activation inhibitor 1
Sequence ID:NM_001253849
NM_001253850
NM_024626
NR_045603
NR_045604
Entrez Gene ID:79679
Ensembl ID:ENSG00000134258

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 117690252 - 117753549

Transcript StartTranscript EndChromosomal Start Chromosomal End
21639117686209117687846
16401809117690234117690403
18102088117695712117695990
20892436117699195117699542
24372501117712728117712792
25022605117753445117753548

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4295775Full LengthBC065717V-set domain containing T cell activation inhibitor 1
30915182Full LengthBC074729V-set domain containing T cell activation inhibitor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_078902  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001253849 NP_001240778    
NM_001253850 NP_001240779    
NM_024626 NP_078902 Q7Z7D3 V-set

Related Sequences

 
mRNAGenPeptSwissProt
BC065717 AAH65717 Q6P097
BC074729 AAH74729 Q7Z7D3
AY280972 AAP37283 Q7Z7D3
AY346100 AAQ24206 Q7Z7D3
AY358352 AAQ88718 Q7Z7D3
AY442303 AAS13400 Q7Z7D3
DQ103757 AAZ17406 Q7Z7D3
DQ836392 ABI16083 Q7Z7D3
AK026071 BAB15349 Q7Z7D3
AK303466 BAH13967 Q6P097

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VTCN1 NP_078902 M.musculus Vtcn1 242122 Gene Info NP_848709 88
R.norvegicus Vtcn1 295322   NP_001019415 87

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)