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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. XCL1, chemokine (C motif) ligand 1
Sequence ID:NM_002995
Entrez Gene ID:6375
Ensembl ID:ENSG00000143184

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1q23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 168545857 - 168550508

NM_002995 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
181168545855168545935
82196168549300168549414
1971222168550289168551314

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
7262708Full LengthBC069817chemokine (C motif) ligand 1
30416260Full LengthBC070309chemokine (C motif) ligand 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002986  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002995 NP_002986 P47992 IL8

Related Sequences

 
mRNAGenPeptSwissProt
U23772 AAC50164 P47992
BC069817 AAH69817 P47992
BC070309 AAH70309 P47992
D43768 BAA07825 P47992
X86474 CAA60198 P47992

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens XCL1 NP_002986 M.musculus Xcl1 16963 Gene Info NP_032536 61
R.norvegicus Xcl1 171371   NP_599188 57

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)