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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RPS12, ribosomal protein S12
Sequence ID:NM_001016
Entrez Gene ID:6206
Ensembl ID:ENSG00000112306

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6q23.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 133135712 - 133138681

NM_001016 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
145133135707133135751
4696133135870133135920
97213133136110133136226
214316133137599133137701
317418133138098133138199
419502133138618133138701

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4565075Full LengthBC017321ribosomal protein S12
6295016Full LengthBC071930ribosomal protein S12
30792687Full LengthBC095424ribosomal protein S12

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001007  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001016 NP_001007   Ribosomal_L7Ae

Related Sequences

 
mRNAGenPeptSwissProt
BC017321 AAH17321 P25398
BC071930 AAH71930 P25398
BC095424 AAH95424 P25398
D28378 BAA05744  
AK311826 BAG34768 P25398
X53505 CAA37582 P25398

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPS12 NP_001007 M.musculus Gm10279 100503211   XP_003085407 100
M.musculus Rps12 20042 Gene Info NP_035425 100
R.norvegicus Rps12 65139   NP_113897 100
S.pombe rps1201 2539588   NP_587869 66
S.pombe rps1202 2540015   NP_595206 65
C.elegans rps-12 175786   NP_498221 61
N.crassa NCU06432 3873492   XP_957323 59
S.cerevisiae RPS12 854551   NP_015014 56

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)