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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. HNRNPA1, heterogeneous nuclear ribonucleoprotein A1
Sequence ID:NM_002136
Entrez Gene ID:3178
Ensembl ID:ENSG00000135486

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 54674531 - 54679028

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2821751Full LengthBC002355heterogeneous nuclear ribonucleoprotein A1
3455742Full LengthBC074502heterogeneous nuclear ribonucleoprotein A1
4101267Full LengthBC070315heterogeneous nuclear ribonucleoprotein A1
4134638Full LengthBC009600heterogeneous nuclear ribonucleoprotein A1
4420039Full LengthBC033714heterogeneous nuclear ribonucleoprotein A1
4564655Full LengthBC012158heterogeneous nuclear ribonucleoprotein A1
5475712Full LengthBC071945heterogeneous nuclear ribonucleoprotein A1
6154800Full LengthBC103707heterogeneous nuclear ribonucleoprotein A1
6154972Full LengthBC073162heterogeneous nuclear ribonucleoprotein A1
6297642Full LengthBC052296heterogeneous nuclear ribonucleoprotein A1
40120894Full LengthBC121133heterogeneous nuclear ribonucleoprotein A1
3615335IncompleteBC004945heterogeneous nuclear ribonucleoprotein A1
4754686IncompleteBC035253heterogeneous nuclear ribonucleoprotein A1
40033043IncompleteBC104236heterogeneous nuclear ribonucleoprotein A1
40033044IncompleteBC104237heterogeneous nuclear ribonucleoprotein A1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002127  

Protein Infomation

NM_002136 NP_002127   RRM_1
NM_031157 NP_112420 P09651  

Related Sequences

BC002355 AAH02355 P09651
BC004945 AAH04945 Q9BSM5
BC009600 AAH09600 P09651
BC012158 AAH12158 P09651
BC033714 AAH33714 P09651
BC052296 AAH52296 P09651
BC070315 AAH70315 P09651
BC071945 AAH71945 Q6IPF2
BC073162 AAH73162  
BC074502 AAH74502 P09651
BC103707 AAI03708 P09651
BC104236 AAI04237 Q3MI39
BC104237 AAI04238 Q3MI39
BC121133 AAI21134 Q0VAC0
AK291113 BAF83802 P09651
AK298176 BAG60447 B4DP35
AK303303 BAG64377 B4E0B5
X04347 CAA27874 P09651
X06747 CAA29922 P09651
X79536 CAA56072 P09651

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens HNRNPA1 NP_112420 M.musculus Hnrnpa1 15382 Gene Info NP_001034218 100
A.gambiae AgaP_AGAP002374 3290608   XP_563821 57
D.melanogaster Hrb87F 48535   NP_001163602 54
D.melanogaster Hrb98DE 43385   NP_733252 52

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)