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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. GAPDH, glyceraldehyde-3-phosphate dehydrogenase
Sequence ID:NM_001256799
RefSeqGene ID:NG_007073
Entrez Gene ID:2597
Ensembl ID:ENSG00000111640

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 6643706 - 6647537

Transcript StartTranscript EndChromosomal Start Chromosomal End

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2989348Full LengthBC025925glyceraldehyde-3-phosphate dehydrogenase
3536969Full LengthBC083511glyceraldehyde-3-phosphate dehydrogenase
3538383Full LengthBC013310glyceraldehyde-3-phosphate dehydrogenase
3543589Full LengthBC001601glyceraldehyde-3-phosphate dehydrogenase
3678259Full LengthBC004109glyceraldehyde-3-phosphate dehydrogenase
3869809Full LengthBC009081glyceraldehyde-3-phosphate dehydrogenase
3876535Full LengthBC029618glyceraldehyde-3-phosphate dehydrogenase
4454083Full LengthBC026907glyceraldehyde-3-phosphate dehydrogenase
4842418Full LengthBC023632glyceraldehyde-3-phosphate dehydrogenase

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002037  

Protein Infomation

NM_001256799 NP_001243728      
NM_002046 NP_002037 P04406 EC Gp_dh_N

Related Sequences

J02642 AAA52496 P04406 EC
M33197 AAA52518 P04406 EC
M28283 AAA52519 Q16768  
M17851 AAA86283 P04406 EC
AF261085 AAF99678 P04406 EC
AY007133 AAG01996 P04406 EC
BC001601 AAH01601 P04406 EC
BC004109 AAH04109 P04406 EC
BC009081 AAH09081 P04406 EC
BC013310 AAH13310 P04406 EC
BC023632 AAH23632 P04406 EC
BC025925 AAH25925 P04406 EC
BC026907 AAH26907 P04406 EC
BC029618 AAH29618 P04406 EC
BC083511 AAH83511 P04406 EC
BT006893 AAP35539 P04406 EC
AY633612 AAV33305 Q2TSD0  
DQ403057 ABD77190 Q0QET7  
DQ891557 ABM82483    
DQ894744 ABM85670    
EF036498 ABO65084 A4UCT1  
HQ727992 AET97565 G9BZK0  
AB062273 BAB93466 P04406 EC
AK299448 BAG61421 B4DRV9  
X01677 CAA25833 P04406 EC
X53778 CAA37794 P04406 EC
CR407671 CAG28599 P04406 EC
AJ844644 CAH59755 Q5ZEY4  
AJ844645 CAH59756 Q5ZEY3  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens GAPDH NP_002037 R.norvegicus Gapdh 24383   NP_058704 94
R.norvegicus LOC685186 685186   XP_001062726 94
R.norvegicus RGD1565368 500983   XP_576394 92
D.melanogaster Gapdh1 35728   NP_525108 77
A.gambiae AgaP_AGAP009623 1278999   XP_318655 76
C.elegans gpd-2 3565504   NP_508535 76
C.elegans gpd-3 180601   NP_508534 76
D.melanogaster Gapdh2 32545   NP_542445 76
C.elegans gpd-1 174603   NP_496237 74
C.elegans gpd-4 174578   NP_496192 74
S.pombe gpd3 2540975   NP_595236 73
S.pombe tdh1 2540547   NP_596154 72
N.crassa NCU01528 3873099   XP_956977 70
S.cerevisiae TDH2 853465   NP_012542 65
S.cerevisiae TDH3 853106   NP_011708 65
S.cerevisiae TDH1 853395   NP_012483 64

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta