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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. STX1B, syntaxin 1B
Sequence ID:NM_052874
Entrez Gene ID:112755
Ensembl ID:ENSG00000099365

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16p11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 31000578 - 31002397

NM_052874 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
136463100057631004221
364737573100445031004560
375838953100466731004804
389639693100800331008076
397040783100827131008379
407941523100882231008895
415342273101224831012322
422843273101241431012513
432844023101284931012923
440345443102168731021828

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6375788Full LengthBC062298syntaxin 1B

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_443106  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_052874 NP_443106 P61266 Syntaxin
SNARE

Related Sequences

 
mRNAGenPeptSwissProt
BC062298 AAH62298 P61266
AY028792 AAK27267 P61266
AY203924 AAP34447 Q6XYE6
AY995211 AAY45889 Q2VPS2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens STX1B NP_443106 R.norvegicus Stx1b 24923   NP_036832 100
M.musculus Stx1b 56216 Gene Info NP_077725 100

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)