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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ITGB5, Integrin, beta 5
Sequence ID:NM_002213
Entrez Gene ID:3693
Ensembl ID:ENSG00000082781

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q21.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 124481794 - 124489029

 Exon Info From UCSC:
NM_002213

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2958666Full LengthBC006541integrin, beta 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002204  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002213 NP_002204 P18084 EGF
Integrin_beta
Integrin_B_tail
EGF_2

Related Sequences

 
mRNAGenPeptSwissProt
M35011 AAA52707 P18084
J05633 AAA59183 P18084
BC006541 AAH06541 P18084
DQ892778 ABM83704  
DQ896025 ABM87024  
AK315429 BAG37817 P18084
X53002 CAA37188 P18084

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ITGB5 NP_002204 M.musculus Itgb5 16419 Gene Info NP_001139356 92
R.norvegicus Itgb5 257645   NP_671480 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)