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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CLSTN3, calsyntenin 3
Sequence ID:NM_014718
Entrez Gene ID:9746
Ensembl ID:ENSG00000139182

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12p13.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 7282969 - 7310718

 Exon Info From UCSC:
NM_014718

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5213830Full LengthBC111491calsyntenin 3
8143770Full LengthBC104767calsyntenin 3
8327751Full LengthBC112283calsyntenin 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055533  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_014718 NP_055533 Q9BQT9 Cadherin

Related Sequences

 
mRNAGenPeptSwissProt
BC039075 AAH39075 Q8IUW6
BC104767 AAI04768 Q9BQT9
BC111491 AAI11492 Q9BQT9
BC112283 AAI12284 Q9BQT9
BC148258 AAI48259 A7MAY1
AY753302 AAV30552 Q9BQT9
AB018269 BAA34446 Q9BQT9
AK299177 BAG61223 B4DRB1
AK299246 BAG61277 B4DRG5
AK316059 BAH14430 B7Z9U4
AJ277460 CAC33084 Q9BQT9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLSTN3 NP_055533 M.musculus Clstn3 232370 Gene Info NP_705728 96
R.norvegicus Clstn3 171393   NP_599203 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)