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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. KRT40, keratin 40
Sequence ID:NM_182497
RefSeqGene ID:NG_012412
Entrez Gene ID:125115
Ensembl ID:ENSG00000204889

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17q21.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 39134133 - 39140526

NM_182497 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
15813913396739134547
5828023913505539135275
8039283913703639137161
92910903913724139137402
109112473913855839138714
124813303913929739139379
133117783914007839140525
177918493914255539142625
185019383914329839143386

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9052770Full LengthBC144250keratin 40
40146427Full LengthBC130396keratin 40
40147687Full LengthBC150174keratin 40
40148622Full LengthBC150191keratin 40

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_872303  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_182497 NP_872303 Q8N9S8
Q6A162
Filament

Related Sequences

 
mRNAGenPeptSwissProt
BC130396 AAI30397 Q6A162
BC144250 AAI44251 B7ZM39
BC150174 AAI50175 Q6A162
BC150191 AAI50192 Q6A162
HQ258247 ADR83001  
AK093919 BAC04250 Q8N9S8
AJ786658 CAH10353 Q6A162
BK004055 DAA04488 Q6A162

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens KRT40 NP_872303 M.musculus Krt40 406221 Gene Info NP_001034755 80
R.norvegicus Krt40 287679   NP_001008821 80

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)