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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC44A2, solute carrier family 44, member 2
Sequence ID:NM_001145056
NM_020428
Entrez Gene ID:57153
Ensembl ID:ENSG00000129353

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 10753098 - 10754588

 Exon Info From UCSC:
NM_001145056
NM_020428

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5268313Full LengthBC040556solute carrier family 44, member 2
3867346IncompleteBC010617solute carrier family 44, member 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_065161  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001145056 NP_001138528    
NM_020428 NP_065161 Q8IWA5 DUF580

Related Sequences

 
mRNAGenPeptSwissProt
AF258549 AAG23752 Q8WY97
BC010617 AAH10617 Q8IWA5
BC040556 AAH40556 Q8IWA5
AK075512 BAC11662 Q8IWA5
AK314582 BAG37158 Q8IWA5
AK027519 BAG51335 Q8IWA5
AK126550 BAG54343 B3KX31
AK294118 BAG57451 Q8IWA5
AL832978 CAH56342 Q8IWA5
AL832517 CAH56352 Q8IWA5
FN668568 CBJ93592 Q8IWA5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC44A2 NP_065161 R.norvegicus Slc44a2 363024   NP_001128187 92
M.musculus Slc44a2 68682 Gene Info NP_690021 91
A.thaliana AT3G15380 820777   NP_566511 28

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)