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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. OTOP1, otopetrin 1
Sequence ID:NM_177998
Entrez Gene ID:133060
Ensembl ID:ENSG00000163982

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4p16.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 4190453 - 4228616

NM_177998 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
117141905294190699
172110941988924199829
1110124042041744204304
1241129942077984207856
1300143642145944214730
1437186942281884228620

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40146461Full LengthBC130430otopetrin 1
40146463Full LengthBC130432otopetrin 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_177998 NP_819056 Q7RTM1  

Related Sequences

 
mRNAGenPeptSwissProt
BC130430 AAI30431 Q7RTM1
BC130432 AAI30433 Q7RTM1
BK000653 DAA00901 Q7RTM1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens OTOP1 NP_819056 M.musculus Otop1 21906 Gene Info NP_766297 80
R.norvegicus Otop1 305427   NP_852098 79

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)