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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ALYREF, Aly/REF export factor
Sequence ID:NM_005782
Entrez Gene ID:10189
Ensembl ID:ENSG00000183684

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17q25.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 79845748 - 79849363

NM_005782 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
173277984571079846020
3285057984611679846293
5065697984639579846458
5707177984705779847204
7188497984856479848695
85011137984919879849461

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6381528Full LengthBC052302THO complex 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005773  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005782 NP_005773 Q86V81 RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
AF047002 AAD09608 Q86V81
BC052302 AAH52302 Q86V81
EU831521 ACE86440  
EU831428 ACE87115  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ALYREF NP_005773 M.musculus Alyref 21681 Gene Info NP_035698 97
A.gambiae AgaP_AGAP006733 1270326   XP_309011 58
A.thaliana AT5G02530 831923   NP_195873 55
D.melanogaster Aly 44029   NP_651968 52
A.thaliana AT5G59950 836117   NP_001190572 50
N.crassa NCU07421 3874560   XP_958422 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)