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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TRIP6, thyroid hormone receptor interactor 6
Sequence ID:NM_003302
Entrez Gene ID:7205
Ensembl ID:ENSG00000087077

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7q22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 100465119 - 100470925

NM_003302 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1279100464949100465227
280407100465482100465609
408533100465729100465854
534905100466116100466487
906999100467991100468084
10001169100468195100468364
11701348100469164100469342
13491469100470245100470365
14701746100470793100471069

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2958142Full LengthBC004999thyroid hormone receptor interactor 6
3610413Full LengthBC002680thyroid hormone receptor interactor 6
3621877Full LengthBC004249thyroid hormone receptor interactor 6
3622017Full LengthBC021540thyroid hormone receptor interactor 6
5122169Full LengthBC028985thyroid hormone receptor interactor 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003293  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003302 NP_003293 Q15654 LIM

Related Sequences

 
mRNAGenPeptSwissProt
AF000974 AAB62222 Q15654
AF025437 AAC39557 Q71V88
L40374 AAC41740 Q15654
BC002680 AAH02680 Q15654
BC004249 AAH04249 Q15654
BC004999 AAH04999 Q15654
BC021540 AAH21540 Q15654
BC028985 AAH28985 Q15654
DQ892893 ABM83819  
DQ896140 ABM87139  
AK291906 BAF84595 Q15654
AB628085 BAK20496 F2ZC06
AB628086 BAK20497 F2ZC07
AB628087 BAK20498 F2ZC08
AB628088 BAK20499 F2ZC09
AJ001902 CAA05080 Q15654
CR749505 CAH18326 Q68D94

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TRIP6 NP_003293 M.musculus Trip6 22051 Gene Info NP_035769 87

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)