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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ZFP36, Zinc finger protein 36, C3H type, homolog (mouse)
Sequence ID:NM_003407
Entrez Gene ID:7538
Ensembl ID:ENSG00000128016

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 39897486 - 39899339

NM_003407 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1823989748639897567
8317453989838239900044

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3900312Full LengthBC009693zinc finger protein 36, C3H type, homolog (mouse)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003398  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003407 NP_003398 P26651 zf-CCCH

Related Sequences

 
mRNAGenPeptSwissProt
M92843 AAA58489 P26651
M63625 AAA61240 P26651
BC009693 AAH09693 P26651
EU446714 ABZ92243  
EU832272 ACE86842  
EU832179 ACE87529  
AK314042 BAG36751 P26651

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ZFP36 NP_003398 R.norvegicus Zfp36 79426   NP_579824 87
M.musculus Zfp36 22695 Gene Info NP_035886 86

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)