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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. UPF3A, UPF3 regulator of nonsense transcripts homolog A (yeast)
Sequence ID:NM_023011
NM_080687
RefSeqGene ID:NG_029528
Entrez Gene ID:65110
Ensembl ID:ENSG00000169062

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:13q34Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:13: 115047188 - 115071283

 Exon Info From UCSC:
NM_023011
NM_080687

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4127465Full LengthBC023569UPF3 regulator of nonsense transcripts homolog A (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_075387  NP_542418  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_023011 NP_075387 Q9H1J1 Smg4_UPF3
NM_080687 NP_542418   Smg4_UPF3

Related Sequences

 
mRNAGenPeptSwissProt
AY013250 AAG48510 Q9H1J1
AF318575 AAG60690 Q9H1J1
BC008694 AAH08694 Q9H1J1
BC023569 AAH23569 Q9H1J1
AK097027 BAG53409 B3KUE7
AK294545 BAG57751 B4DGE0
AK302003 BAG63406 B4DXJ4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens UPF3A NP_075387 M.musculus Upf3a 67031 Gene Info NP_080200 73
R.norvegicus Upf3a 361176   NP_001012159 73

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)