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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC38A1, solute carrier family 38, member 1
Sequence ID:NM_001077484
NM_030674
Entrez Gene ID:81539
Ensembl ID:ENSG00000111371

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q13.11Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 46581581 - 46662549

 Exon Info From UCSC:
NM_001077484
NM_030674

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3871101Full LengthBC010620solute carrier family 38, member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_109599  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001077484 NP_001070952    
NM_030674 NP_109599 Q9H2H9 Aa_trans

Related Sequences

 
mRNAGenPeptSwissProt
AF271070 AAG39354 Q9H2H9
AF247166 AAG44546 Q9H2H9
BC010620 AAH10620 Q9H2H9
DQ891017 ABM81943  
EU176550 ABW03351  
AK027825 BAB55394 Q9H2H9
AK074758 BAC11186 Q9H2H9
AK074797 BAC11215 Q8NCD8
AK074949 BAC11310 Q9H2H9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC38A1 NP_001070952 R.norvegicus Slc38a1 170567   NP_620187 94
M.musculus Slc38a1 105727 Gene Info NP_598847 93
A.thaliana AT3G30390 822740   NP_001030795 31
A.thaliana AT5G38820 833873   NP_198698 28

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)