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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. IFT46, intraflagellar transport 46 homolog (Chlamydomonas)
Sequence ID:NM_001168618
NM_020153
Entrez Gene ID:56912
Ensembl ID:ENSG00000118096

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q23.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 118415258 - 118436714

 Exon Info From UCSC:
NM_001168618
NM_020153

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2822487Full LengthBC012802chromosome 11 open reading frame 60
4078579Full LengthBC022856chromosome 11 open reading frame 60
4300917Full LengthBC011647chromosome 11 open reading frame 60

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001168618 NP_001162089 Q9NQC8  
NM_020153 NP_064538    

Related Sequences

 
mRNAGenPeptSwissProt
BC011647 AAH11647 Q9NQC8
BC012802 AAH12802 Q9NQC8
BC022856 AAH22856 Q9NQC8
AK025480 BAB15146 Q9NQC8
AK289521 BAF82210 Q9NQC8
AL136934 CAB66868 Q9NQC8
AJ249980 CAB96537 Q9NQC8
CR457344 CAG33625 Q9NQC8
AM393030 CAL37908  
AM393689 CAL38565  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens IFT46 NP_001162089 R.norvegicus Ift46 300675   NP_001019931 95
M.musculus Ift46 76568 Gene Info NP_076320 95
C.elegans dyf-6 3565899   NP_001076767 48
A.gambiae AgaP_AGAP005177 1274883   XP_314073 41
D.melanogaster CG15161 35114   NP_609890 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)