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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. H3F3A, H3 histone, family 3A
Sequence ID:NM_002107
Entrez Gene ID:3020
Ensembl ID:ENSG00000163041

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q42.12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 226250425 - 226259702

NM_002107 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4077662Full LengthBC029405H3 histone, family 3A
5162817Full LengthBC081561H3 histone, family 3A
6014954Full LengthBC038989H3 histone, family 3A
30718542Full LengthBC095447H3 histone, family 3A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002098  

Protein Infomation

NM_002107 NP_002098 P84243 Histone

Related Sequences

M11354 AAA52653 P84243
M11353 AAA52654 P84243
BC029405 AAH29405 P84243
BC038989 AAH38989 P84243
BC081560 AAH81560 P84243
BC081561 AAH81561 P84243
BC095447 AAH95447 P84243
DQ892615 ABM83541  
DQ895855 ABM86781  
D28384 BAA05750  
AK291102 BAF83791 A8K4Y7
AK311905 BAG34846 B2R4P9
AK293541 BAG57022 B4DEB1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens H3F3A NP_002098 H.sapiens H3F3B 3021 Gene Info NP_005315 100
R.norvegicus LOC100361558 100361558   XP_002728089 100
R.norvegicus H3f3b 117056   NP_446437 100
M.musculus Gm6749 627371 Gene Info XP_897119 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)