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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. IFNA13, Interferon, alpha 13
Sequence ID:NM_006900
Entrez Gene ID:3447
Ensembl ID:ENSG00000233816

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9p22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 21367422 - 21368056

NM_006900 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
17052136737021368074

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
7262166Full LengthBC069427interferon, alpha 13
7939833Full LengthBC093988interferon, alpha 13

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_008831  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006900 NP_008831   Interferon

Related Sequences

 
mRNAGenPeptSwissProt
BC069427 AAH69427 P01562
BC093988 AAH93988 P01562
HQ448423 ADQ32903  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens IFNA13 NP_008831 H.sapiens IFNA1 3439 Gene Info NP_076918 99
M.musculus Ifna13 230396 Gene Info NP_796321 64
M.musculus Ifna6 15969 Gene Info NP_996754 64
M.musculus Ifna9 15972 Gene Info NP_034637 64
M.musculus Ifna5 15968 Gene Info NP_034635 63
M.musculus Gm13280 230398 Gene Info NP_996750 62
M.musculus Ifna1 15962 Gene Info NP_034632 62
M.musculus Ifna12 242519 Gene Info NP_796335 62
M.musculus Gm12597 242517 Gene Info NP_996753 62
M.musculus Ifnab 15974 Gene Info NP_032362 60
M.musculus Ifna14 404549 Gene Info NP_996858 60
M.musculus Ifna7 15970 Gene Info NP_032360 60
M.musculus Ifna11 15964 Gene Info NP_032359 60
R.norvegicus LOC680208 680208   XP_001056120 59
M.musculus Ifna2 15965 Gene Info NP_034633 59
R.norvegicus Ifna5 690894   XP_001076062 59
R.norvegicus RGD1561246 502959   XP_578464 57

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)